JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0083.3 SRF Homo sapiens MADS box factors Responders to external signals (SRF/RLM1)
MA0084.1 SRY Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0084.2 SRY Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0085.1 Su(H) Drosophila melanogaster
MA0085.2 Su(H) Drosophila melanogaster
MA0086.1 sna Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0086.2 sna Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0086.3 sna Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0087.1 Sox5 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0087.2 Sox5 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
Showing 10 profiles of page 22 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.