JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0007.4 Ar Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0008.1 HAT5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0008.2 HAT5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0008.3 HAT5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0008.4 HAT5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0009.1 Tbxt Mus musculus T-Box factors Brachyury-related factors
MA0009.2 TBXT Homo sapiens T-Box factors Brachyury-related factors
MA0010.1 br Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0010.2 br Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0011.1 br Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 10 profiles of page 3 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.