10099 class Unknown 10099 comment - 10099 Description The matrix is made of 9 sequences that have been tested positively as sites of transcription initiation in vivo. 10099 End relative to TSS +33 10099 medline 15231738 10099 Start relative to TSS +15 10100 class Unknown 10100 comment - 10100 Description The INR consensus PyPyA(+1)NT/APyPy (Smale, Kadonaga 2003) is characterized by an A at the TSS (+1) and a cytosine at position -1. TFIID specific. 10100 End relative to TSS +6 10100 medline 2329577 10100 Start relative to TSS -2 10101 class Unknown 10101 comment - 10101 Description The GC-box is recognised by transcription factor Sp1 and typically occurs in housekeeping genes (Kadonaga et al. 1986). 10101 End relative to TSS -157 to +8 10101 medline 2329577 10101 Start relative to TSS -170 to -6 10102 class Unknown 10102 comment - 10102 Description The CCAAT-box is recognised by the CCAAT-binding proteins NY-I (Dorn et al. 1987), NF-I and C/EBP. 10102 End relative to TSS -208 to -52 10102 medline 2329577 10102 Start relative to TSS -219 to -64 10103 class Unknown 10103 comment - 10103 Description The matrix is generated from the DPE containing sequences found in the Drosophila Core Promoter Database http://www-biology.ucsd.edu/labs/Kadonaga/DCPD.htm . 10103 End relative to TSS +34 10103 medline 10848601 10103 Start relative to TSS +26 10104 class Unknown 10104 comment - 10104 Description Core promoter element that is recognised by TFIIB located uptream of the TATA-box. 10104 End relative to TSS -32 10104 medline 9420329 10104 Start relative to TSS -39 10105 class Unknown 10105 comment - 10105 Description Core promoter element that is recognised by TFIIB located downstream of the TATA-box. 10105 End relative to TSS -17 10105 medline 16230532 10105 Start relative to TSS -23 10106 class Unknown 10106 comment - 10106 Description The DCE consists of three subelements, and each is distinct from the DPE sequence: S_I is CTTC, S_II is CTGT, and S_III is AGC. S_I resides approximately from +6 to +11, S_II from +16 to +21, and S_III from +30 to +34. (Lee et al.). The matrix is built ba 10106 End relative to TSS +11 10106 medline 16227614 10106 Start relative to TSS +6 10107 class Unknown 10107 comment - 10107 Description The DCE consists of three subelements, and each is distinct from the DPE sequence: S_I is CTTC, S_II is CTGT, and S_III is AGC. S_I resides approximately from +6 to +11, S_II from +16 to +21, and S_III from +30 to +34. (Lee et al.). The matrix are built b 10107 End relative to TSS +21 10107 medline 16227614 10107 Start relative to TSS +16 10108 class Unknown 10108 comment - 10108 Description The DCE consists of three subelements, and each is distinct from the DPE sequence: S_I is CTTC, S_II is CTGT, and S_III is AGC. S_I resides approximately from +6 to +11, S_II from +16 to +21, and S_III from +30 to +34. (Lee et al.). The matrix are built b 10108 End relative to TSS +34 10108 medline 16227614 10108 Start relative to TSS +30 10109 class Unknown 10109 comment - 10109 Description The matrix is made of the human promoter sequences that are shown in the supplementary material (Table S1). We included only the sites that show XCPE1 activity in vitro. 10109 End relative to TSS +2 10109 medline 17210644 10109 Start relative to TSS -8 10110 class Unknown 10110 comment - 10110 Description The dominating motif TATA ( first T in TATAT) is located in a preferred region from -32 to -28 relative to the TSS (see pub med 16916456). This model is also housed in JASPAR CORE (MA0108) 10110 End relative to TSS -25 to -9 10110 medline 2329577 10110 Start relative to TSS -39 to -23 10111 class Unknown 10111 comment - 10111 Description Downstream core promoter element found in TATA-less promoters sharing similar features with the pgp1 promoter. The matrix is built from 14 promoters identified in the literature similar to the pgp1 promoter. It is often found in promoters with multiple st 10111 End relative to TSS +6 to +116 10111 medline 8530439 10111 Start relative to TSS +1 to +110