Detailed information of matrix profile MA0065.2

Profile summary

Name: Pparg::Rxra
Matrix ID: MA0065.2
Class: Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 18981474
Uniprot ID: P37238   P28700  
Pazar TF: TF0000041
TFBSshape ID: 66
TFencyclopedia IDs: 336 343
Source:
Comment: Heterodimer between PPARG and RXRA

Sequence logo

Frequency matrix

A [ 94 101 390 100 139 145 71 819 522 713 82 41 22 54 676 ]
C [ 317 166 23 3 15 129 547 21 48 5 2 9 99 555 58 ]
G [ 320 127 368 671 674 395 179 15 270 137 767 693 263 144 47 ]
T [ 126 464 79 87 34 193 66 8 23 9 12 120 479 109 81 ]

Binding sites information

TFBS profiles