Detailed information of matrix profile MA0072.1

Profile summary

Name: RORA(var.2)
Matrix ID: MA0072.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SELEX
Validation: 7926749
Uniprot ID: P35398  
Pazar TF: TF0000048
TFBSshape ID: 72
TFencyclopedia IDs: 340
Source:
Comment: isoform type

Sequence logo

Frequency matrix

A [ 9 17 15 35 23 2 0 28 0 0 0 0 36 15 ]
C [ 8 2 0 1 0 12 0 0 0 0 0 36 0 6 ]
G [ 8 7 3 0 0 13 0 8 36 36 0 0 0 10 ]
T [ 11 10 18 0 13 9 36 0 0 0 36 0 0 5 ]

Binding sites information

TFBS profiles