Detailed information of matrix profile MA0122.3

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Profile summary
Name: Nkx3-2
Matrix ID: MA0122.3
Class: Homeo domain factors
Family: NK
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 18585360
Uniprot ID: P97503  
Source: 30462313
Comment:

Sequence logo

Frequency matrix

         
A [ 2890 2241 325 9919 10109 94 212 218 1033 2359 2088 3458 3123 ]
C [ 1850 1368 68 68 29 10 19 23 1504 1154 1466 1727 1736 ]
G [ 2083 991 147 138 32 9965 82 9900 5079 1109 952 1614 1474 ]
T [ 3397 5620 9680 95 50 151 9907 79 2604 5598 5714 3421 3887 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0122.1 MA0122 1 Nkx3-2 Mus musculus
NK Homeo domain factors
MA0122.2 MA0122 2 NKX3-2 Homo sapiens
NK Homeo domain factors
MA0122.3 MA0122 3 Nkx3-2 Mus musculus
NK Homeo domain factors
MA0122.4 MA0122 4 Nkx3-2 Mus musculus
NK Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0716.1

ChIP-seq Centrality
-log(P-value): 8123.7

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0716.1

ChIP-seq Centrality
-log(P-value): 7200.31

TFFM detailed summary logos

Description:

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Consensus:

Included Models:

GC Content: