Detailed information of matrix profile MA0508.3

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Profile summary
Name: PRDM1
Matrix ID: MA0508.3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 28473536
Uniprot ID: O75626  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 19978 27294 660 49466 432 52619 50943 52905 829 17272 22293 ]
C [ 7861 4098 290 1390 207 561 1011 826 701 8768 6638 ]
G [ 17518 13567 52821 1076 53465 488 1346 467 52752 12288 17788 ]
T [ 10124 10522 1710 3549 1377 1813 2181 1283 1199 17153 8762 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0508.1 MA0508 1 PRDM1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0508.2 MA0508 2 PRDM1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0508.3 MA0508 3 PRDM1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0508.4 MA0508 4 PRDM1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0087.3

ChIP-seq Centrality
-log(P-value): 4342.82

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0087.3

ChIP-seq Centrality
-log(P-value): 4167.54

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: