Detailed information of matrix profile MA0509.1

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Profile summary
Name: Rfx1
Matrix ID: MA0509.1
Class: Fork head / winged helix factors
Family: RFX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 20189986
Uniprot ID: P48377  
Pazar TF:
TFBSshape ID: 309
TFencyclopedia IDs: 819
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 290 58 145 421 37 0 1254 138 604 186 287 1793 2082 0 ]
C [ 157 222 833 433 1748 2048 402 115 0 0 1710 0 0 2138 ]
G [ 1532 377 131 762 96 0 73 96 1534 1952 12 244 56 0 ]
T [ 159 1481 1029 522 257 90 409 1789 0 0 129 101 0 0 ]

Binding sites information

   

TFBS profiles

External links

              
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0509.1 MA0509 1 Rfx1 Mus musculus
RFX-related factors Fork head / winged helix factors
     

log(P-value) = -1359

TFFM details

TFFM ID: TFFM0089.1

ChIP-seq Centrality
log(P-value): -549.083

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0089.1

ChIP-seq Centrality
log(P-value): -545.375

TFFM detailed summary logos

Description: regulatory factor X,1 (influences HLA class II expression)

Alias: EF-C

Symbol: RFX1

Consensus:

Included Models:

GC Content: