Detailed information of matrix profile MA0514.1

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Profile summary
Name: Sox3
Matrix ID: MA0514.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 8625802
Uniprot ID: P53784  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 989 1173 1115 2067 0 2067 2067 1805 515 250 ]
C [ 382 22 254 0 1923 0 0 0 0 330 ]
G [ 654 853 698 0 144 0 0 0 1552 1487 ]
T [ 42 19 0 0 0 0 0 262 0 0 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0514.1 MA0514 1 Sox3 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0514.2 MA0514 2 Sox3 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0514.3 MA0514 3 Sox3 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
     

-log(P-value) = 467.0

TFFM details

TFFM ID: TFFM0096.1

ChIP-seq Centrality
-log(P-value): 551.225

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0096.1

ChIP-seq Centrality
-log(P-value): 575.911

TFFM detailed summary logos

Description: SRY (sex determining region Y)-box 3

Alias: -

Symbol: SOX3

Consensus:

Included Models:

GC Content: