Detailed information of matrix profile MA0554.1

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Profile summary
Name: SOC1
Matrix ID: MA0554.1
Class: MADS box factors
Family: MIKC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 8774892
Uniprot ID: O64645  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 183 14 641 766 858 752 673 336 262 0 635 775 762 339 378 ]
C [ 665 683 86 0 0 0 0 56 9 13 89 51 34 113 99 ]
G [ 23 10 71 24 8 6 78 37 617 855 47 0 27 264 123 ]
T [ 17 181 90 98 22 130 137 459 0 20 117 62 65 172 288 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0554.1 MA0554 1 SOC1 Arabidopsis thaliana
MIKC MADS box factors
MA0554.2 MA0554 2 SOC1 Arabidopsis thaliana
Type II MADS box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0585.1

ChIP-seq Centrality
-log(P-value): 412.455

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0585.1

ChIP-seq Centrality
-log(P-value): 420.873

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: