Detailed information of matrix profile MA0577.2

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Profile summary
Name: SPL3
Matrix ID: MA0577.2
Class: C2H2 zinc finger factors
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 16554053
Uniprot ID: P93015  
Source: 27203113
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 26 0 0 0 0 158 0 68 ]
C [ 6 158 158 0 0 0 158 29 ]
G [ 20 0 0 158 0 0 0 33 ]
T [ 106 0 0 0 158 0 0 28 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0577.1 MA0577 1 SPL3 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA0577.2 MA0577 2 SPL3 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA0577.3 MA0577 3 SPL3 Arabidopsis thaliana
SBP
MA0577.4 MA0577 4 SPL3 Arabidopsis thaliana
SBP C3H(C),C2HC zinc fingers factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0741.1

ChIP-seq Centrality
-log(P-value): 739.891

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0741.1

ChIP-seq Centrality
-log(P-value): 739.365

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: