Detailed information of matrix profile MA0680.1

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Profile summary
Name: PAX7
Matrix ID: MA0680.1
Class: Paired box factors
Family: Paired plus homeo domain
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 10567552
Uniprot ID: P23759  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 679 3708 3708 6 10 1135 3708 12 21 3708 ]
C [ 68 18 3 21 2934 27 0 0 25 72 ]
G [ 98 16 0 3 24 2573 10 0 9 47 ]
T [ 3708 6 0 3708 774 0 10 3708 3708 249 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0680.1 MA0680 1 PAX7 Homo sapiens
Paired plus homeo domain Paired box factors
MA0680.2 MA0680 2 Pax7 Mus musculus
Paired plus homeo domain Paired box factors
MA0680.3 MA0680 3 Pax7 Mus musculus
Paired plus homeo domain Paired box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0550.1

ChIP-seq Centrality
-log(P-value): 27006.4

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0550.1

ChIP-seq Centrality
-log(P-value): 27220.3

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: