Detailed information of matrix profile MA0719.1

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Profile summary
Name: RHOXF1
Matrix ID: MA0719.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585360
Uniprot ID: Q8NHV9  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 2123 2275 0 7376 0 1367 10916 3193 ]
C [ 2117 0 0 3540 0 5373 478 1855 ]
G [ 3453 10916 10916 0 0 0 0 2644 ]
T [ 3223 0 0 0 10916 5543 2837 3224 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0719.1 MA0719 1 RHOXF1 Homo sapiens
Paired-related HD factors Homeo domain factors
MA0719.2 MA0719 2 RHOXF1 Homo sapiens
Paired-related HD factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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