Detailed information of matrix profile MA0726.1

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Profile summary
Name: VSX2
Matrix ID: MA0726.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585360
Uniprot ID: P58304  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 3387 1014 13809 13809 63 402 13809 4255 ]
C [ 4288 2109 447 92 123 343 363 445 ]
G [ 3243 321 567 186 124 397 2725 9554 ]
T [ 2891 13809 626 118 13809 13809 1080 427 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0726.1 MA0726 1 VSX2 Homo sapiens
Paired-related HD factors Homeo domain factors
MA0726.2 MA0726 2 VSX2 Homo sapiens
Paired-related HD factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0775.1

ChIP-seq Centrality
-log(P-value): 24813.3

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0775.1

ChIP-seq Centrality
-log(P-value): 26856.7

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: