Detailed information of matrix profile MA0730.1

Profile summary

Name: RARA(var.2)
Matrix ID: MA0730.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P10276  
Pazar TF: TF0000449
TFBSshape ID:
TFencyclopedia IDs: 337
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 1089 0 0 6 10 1391 301 213 147 972 1015 1126 2 1 8 4 1486 ]
C [ 24 0 2 11 1980 16 397 432 677 118 17 16 0 7 11 1923 3 ]
G [ 313 1488 1451 17 9 11 84 584 157 198 348 269 1455 1440 13 26 25 ]
T [ 0 2 71 1143 21 2 581 223 502 228 7 1 4 35 1131 22 10 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.