Detailed information of matrix profile MA0778.1

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Profile summary
Name: NFKB2
Matrix ID: MA0778.1
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 20066093
Uniprot ID: Q00653  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 5041 101 1 8 2663 8380 5182 1173 852 256 2 8 1527 ]
C [ 2456 97 1 5 11 977 60 1395 11011 12673 12710 12888 3324 ]
G [ 2306 16291 16041 16055 13129 856 51 1077 19 1 1 3 2182 ]
T [ 1980 4 3 565 987 636 5970 10976 1867 44 2 23 5985 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0778.1 MA0778 1 NFKB2 Homo sapiens
NF-kappaB-related factors Rel homology region (RHR) factors
MA0778.2 MA0778 2 NFKB2 Homo sapiens
NF-kappaB-related factors Rel homology region (RHR) factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0193.1

ChIP-seq Centrality
-log(P-value): 13165.4

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0193.1

ChIP-seq Centrality
-log(P-value): 13015.5

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: