Detailed information of matrix profile MA0782.1

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Profile summary
Name: PKNOX1
Matrix ID: MA0782.1
Class: Homeo domain factors
Family: TALE-type homeo domain factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 25233378
Uniprot ID: P55347  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 421 13 18745 6 19248 19 1185 7 8 22 13 19207 ]
C [ 193 69 9 22141 16 7095 21059 38 0 146 22060 73 ]
G [ 57 17957 101 13 35 6611 7 3 18108 6 95 234 ]
T [ 17625 19 191 352 5 810 22 17768 11 17458 23 94 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0782.1 MA0782 1 PKNOX1 Homo sapiens
TALE-type homeo domain factors Homeo domain factors
MA0782.2 MA0782 2 PKNOX1 Homo sapiens
TALE-type homeo domain factors Homeo domain factors
MA0782.3 MA0782 3 PKNOX1 Homo sapiens
TALE-type homeo domain factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0560.1

ChIP-seq Centrality
-log(P-value): 12160.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0560.1

ChIP-seq Centrality
-log(P-value): 13581.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: