Detailed information of matrix profile MA0857.1

Profile summary

Name: Rarb
Matrix ID: MA0857.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P22605  
Pazar TF: TF0000564
TFBSshape ID:
TFencyclopedia IDs: 388
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 1098 1348 1309 0 0 6 1 1618 1559 1443 1541 1 0 1 1 1563 ]
C [ 257 33 2 0 1 4 1316 0 11 4 0 0 1 8 1409 0 ]
G [ 181 239 243 1964 1941 15 9 14 3 173 30 1972 1774 4 2 3 ]
T [ 413 91 0 1 31 1777 8 0 84 24 0 0 272 1717 8 2 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.