Detailed information of matrix profile MA0858.1

Profile summary

Name: Rarb(var.2)
Matrix ID: MA0858.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P22605  
Pazar TF: TF0000564
TFBSshape ID:
TFencyclopedia IDs: 388
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 610 0 2 0 1 728 293 249 38 438 398 639 1 0 0 0 693 ]
C [ 3 1 1 2 686 0 210 252 239 34 4 0 1 2 3 765 0 ]
G [ 39 713 663 0 2 4 15 140 116 41 218 37 682 663 4 0 2 ]
T [ 0 0 22 694 1 0 204 64 281 158 4 1 0 26 674 4 1 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.