Detailed information of matrix profile MA0859.1

Profile summary

Name: Rarg
Matrix ID: MA0859.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P18911  
Pazar TF: TF0000797
TFBSshape ID:
TFencyclopedia IDs: 389
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 12548 7220 3 0 20 3 8844 9169 8864 9211 1 0 6 0 9147 11044 ]
C [ 1655 147 0 3 35 12653 2 49 13 4 1 2 40 11730 4 4836 ]
G [ 11289 3074 12765 11969 64 38 15 114 618 394 13267 9298 51 67 82 2470 ]
T [ 1309 5 0 1826 10030 79 0 257 353 0 3 2628 9774 105 1 5566 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.