Detailed information of matrix profile MA0870.1

Profile summary

Name: Sox1
Matrix ID: MA0870.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 12920151
Uniprot ID: P53783  
Pazar TF:
TFBSshape ID:
TFencyclopedia IDs: 830
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 1369 2316 0 2316 2316 13 1682 782 4 2316 0 0 0 79 222 ]
C [ 396 51 2316 12 325 0 5 508 2316 0 0 14 0 260 329 ]
G [ 356 36 0 0 0 0 359 525 51 0 244 0 2316 58 265 ]
T [ 195 85 0 7 0 2316 634 502 33 0 2316 2316 0 2316 1499 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.