Detailed information of matrix profile MA0909.2

  1. Home
  2. Matrix > MA0909.2

Profile summary
Name: HOXD13
Matrix ID: MA0909.2
Class: Homeo domain factors
Family: HOX
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: P35453  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 2 0 0 0 0 368 0 0 0 0 12 ]
C [ 3 13 0 12 0 0 5 0 0 329 129 ]
G [ 303 249 73 0 0 0 0 140 368 368 182 ]
T [ 60 368 368 368 368 6 368 368 0 65 45 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0909.1 MA0909 1 HOXD13 Homo sapiens
HOX Homeo domain factors
MA0909.2 MA0909 2 HOXD13 Homo sapiens
HOX Homeo domain factors
MA0909.3 MA0909 3 Hoxd13 Mus musculus
HOX Homeo domain factors
MA0909.4 MA0909 4 Hoxd13 Mus musculus
HOX Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0506.1

ChIP-seq Centrality
-log(P-value): 3673.47

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0506.1

ChIP-seq Centrality
-log(P-value): 3307.66

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: