Detailed information of matrix profile MA1056.1

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Profile summary
Name: SPL11
Matrix ID: MA1056.1
Class: C2H2 zinc finger factors
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 16554053
Uniprot ID: Q9FZK0  
Source: 25215497
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 353 271 185 21 0 0 1000 0 166 339 229 314 ]
C [ 188 78 773 936 0 0 0 1000 63 172 229 229 ]
G [ 271 78 21 21 1000 0 0 0 624 318 229 229 ]
T [ 188 572 21 21 0 1000 0 0 147 172 314 229 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1056.1 MA1056 1 SPL11 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA1056.2 MA1056 2 SPL11 Arabidopsis thaliana
SBP C3H(C),C2HC zinc fingers factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: