Detailed information of matrix profile MA1449.1

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Profile summary
Name: hlh-30
Matrix ID: MA1449.1
Class: Basic helix-loop-helix factors (bHLH)
Family:
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: ChIP-seq
Validation: 19632181
Uniprot ID: H2KZZ2  
Source: 30445619
Comment: Similar to PBM motif

Sequence logo

Frequency matrix

         
A [ 513 695 125 6 1667 14 155 67 6 1352 245 474 ]
C [ 371 158 181 1739 16 1562 31 12 11 104 664 404 ]
G [ 404 664 104 11 12 31 1562 16 1739 181 158 371 ]
T [ 474 245 1352 6 67 155 14 1667 6 125 695 513 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1449.1 MA1449 1 hlh-30 Caenorhabditis elegans
Basic helix-loop-helix factors (bHLH)
MA1449.2 MA1449 2 hlh-30 Caenorhabditis elegans
bHLH-ZIP Basic helix-loop-helix factors (bHLH)
     

-log(P-value) = 250.006

TFFM details

TFFM ID: TFFM0502.1

ChIP-seq Centrality
-log(P-value): 1362.85

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0502.1

ChIP-seq Centrality
-log(P-value): 1304.21

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: