Detailed information of matrix profile MA0065.1

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Profile summary
Name: PPARG::RXRA
Matrix ID: MA0065.1
Class: Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SELEX
Validation: 11139380
Uniprot ID: P19793   P37231  
Source:
Comment: Heterodimer between PPARG and RXRA

Sequence logo

Frequency matrix

         
A [ 12 4 15 0 2 39 2 0 0 0 0 0 39 2 0 0 0 12 13 12 ]
C [ 12 9 4 2 1 0 39 41 2 0 0 2 0 39 41 24 27 6 8 7 ]
G [ 10 15 12 1 36 2 0 0 0 0 0 37 2 0 0 0 1 4 13 12 ]
T [ 7 13 10 38 2 0 0 0 39 41 41 2 0 0 0 17 13 19 7 10 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0065.1 MA0065 1 PPARG::RXRA Homo sapiens
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
MA0065.2 MA0065 2 Pparg::Rxra Mus musculus
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
MA0065.3 MA0065 3 Pparg::Rxra Mus musculus
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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GC Content: