Detailed information of matrix profile MA0083.3

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Profile summary
Name: SRF
Matrix ID: MA0083.3
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 2243767
Uniprot ID: P11831  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 248 72 686 7 0 1074 16 1610 0 1571 61 19 0 167 372 1129 ]
C [ 98 145 670 1872 1896 0 0 8 2 6 18 11 15 144 1144 80 ]
G [ 63 1023 105 2 9 12 0 5 0 0 13 1787 1771 611 152 125 ]
T [ 913 337 262 8 8 439 1162 1 1163 54 1137 3 0 627 75 214 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0083.1 MA0083 1 SRF Homo sapiens
Responders to external signals (SRF/RLM1) MADS box factors
MA0083.2 MA0083 2 SRF Homo sapiens
Responders to external signals (SRF/RLM1) MADS box factors
MA0083.3 MA0083 3 SRF Homo sapiens
Responders to external signals (SRF/RLM1) MADS box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0100.1

ChIP-seq Centrality
-log(P-value): 3752.45

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0100.1

ChIP-seq Centrality
-log(P-value): 3752.45

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: