Detailed information of matrix profile MA0485.2

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Profile summary
Name: HOXC9
Matrix ID: MA0485.2
Class: Homeo domain factors
Family: HOX
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 9079637
Uniprot ID: P31274  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 5057 3541 0 0 2094 15541 0 0 15541 0 ]
C [ 2191 1366 0 0 0 11 15541 0 0 15541 ]
G [ 5037 2033 12 0 0 5 0 15541 147 1760 ]
T [ 3256 15541 15541 15541 15541 5 4250 0 0 4347 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0485.1 MA0485 1 Hoxc9 Mus musculus
HOX Homeo domain factors
MA0485.2 MA0485 2 HOXC9 Homo sapiens
HOX Homeo domain factors
MA0485.3 MA0485 3 HOXC9 Homo sapiens
HOX Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0047.2

ChIP-seq Centrality
-log(P-value): 6893.44

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0047.2

ChIP-seq Centrality
-log(P-value): 6823.14

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: