Detailed information of matrix profile MA0512.2

  1. Home
  2. Matrix > MA0512.2

Profile summary
Name: Rxra
Matrix ID: MA0512.2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 1323763
Uniprot ID: P28700  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 37 1775 39867 3335 51 19 368 21 2686 40596 4372 159 75 2084 ]
C [ 2447 348 267 38185 39798 1369 830 120 577 372 36414 38290 30406 30811 ]
G [ 158 43686 114 85 71 73 89 51 44342 109 72 77 200 5031 ]
T [ 44403 63 44 63 39 45265 45275 46204 97 47 132 110 21345 12568 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0512.1 MA0512 1 Rxra Mus musculus
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA0512.2 MA0512 2 Rxra Mus musculus
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0094.1

ChIP-seq Centrality
-log(P-value): 2658.03

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0094.1

ChIP-seq Centrality
-log(P-value): 2574.75

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: