Detailed information of matrix profile MA0514.2

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Profile summary
Name: Sox3
Matrix ID: MA0514.2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type:
Validation: 8625802
Uniprot ID: P53784  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 3745 4092 11761 150 11284 11623 573 1617 1759 3443 3455 ]
C [ 1834 2777 52 11125 312 143 150 133 1582 3407 2887 ]
G [ 3478 2950 76 178 93 143 104 10041 7664 2915 2910 ]
T [ 2921 2159 89 525 289 69 11151 187 973 2213 2726 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0514.1 MA0514 1 Sox3 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0514.2 MA0514 2 Sox3 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0514.3 MA0514 3 Sox3 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
     

-log(P-value) = 1126.67

TFFM details

TFFM ID: TFFM0734.1

ChIP-seq Centrality
-log(P-value): 2780.95

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0734.1

ChIP-seq Centrality
-log(P-value): 2697.03

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: