Detailed information of matrix profile MA0658.1

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Profile summary
Name: LHX6
Matrix ID: MA0658.1
Class: Homeo domain factors
Family: HD-LIM
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: Q9UPM6  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 1507 194 2 4438 4438 0 0 4438 1422 264 ]
C [ 728 2769 243 108 15 0 487 28 791 1548 ]
G [ 1654 637 0 766 98 14 90 253 3015 769 ]
T [ 548 1668 4438 0 0 4438 4438 0 529 1857 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0658.1 MA0658 1 LHX6 Homo sapiens
HD-LIM Homeo domain factors
MA0658.2 MA0658 2 LHX6 Homo sapiens
HD-LIM Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0758.1

ChIP-seq Centrality
-log(P-value): 235.688

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0758.1

ChIP-seq Centrality
-log(P-value): 150.736

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: