Detailed information of matrix profile MA0693.2

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Profile summary
Name: VDR
Matrix ID: MA0693.2
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SMiLE-seq
Validation: 8065900
Uniprot ID: P11473  
Source: 28092692
Comment:

Sequence logo

Frequency matrix

         
A [ 19 174 827 890 32 34 32 455 ]
C [ 76 28 82 70 919 386 567 43 ]
G [ 19 743 31 23 25 24 45 280 ]
T [ 886 55 61 17 24 555 356 222 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0693.1 MA0693 1 Vdr Mus musculus
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA0693.2 MA0693 2 VDR Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA0693.3 MA0693 3 Vdr Mus musculus
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA0693.4 MA0693 4 Vdr Mus musculus
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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GC Content: