Detailed information of matrix profile MA0712.1

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Profile summary
Name: OTX2
Matrix ID: MA0712.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585360
Uniprot ID: P32243  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 9594 8343 1228 28028 0 1328 28028 12678 ]
C [ 8260 1630 699 2361 0 360 0 2453 ]
G [ 7601 28028 28028 62 0 43 136 6846 ]
T [ 2573 1094 1062 370 28028 28028 971 6051 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0712.1 MA0712 1 OTX2 Homo sapiens
Paired-related HD factors Homeo domain factors
MA0712.2 MA0712 2 OTX2 Homo sapiens
Paired-related HD factors Homeo domain factors
MA0712.3 MA0712 3 OTX2 Homo sapiens
Paired-related HD factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0197.1

ChIP-seq Centrality
-log(P-value): 3346.57

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0197.1

ChIP-seq Centrality
-log(P-value): 3476.37

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: