Detailed information of matrix profile MA0754.1

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Profile summary
Name: CUX1
Matrix ID: MA0754.1
Class: Homeo domain factors
Family: HD-CUT
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 7799919
Uniprot ID: P39880  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 4099 25659 25659 71 51 9580 25659 150 25659 8168 ]
C [ 4649 3296 109 294 25659 264 45 95 9420 7633 ]
G [ 2401 15550 192 77 53 16079 85 29 7560 3958 ]
T [ 25659 7605 167 25659 595 130 231 25659 7079 5900 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0754.1 MA0754 1 CUX1 Homo sapiens
HD-CUT Homeo domain factors
MA0754.2 MA0754 2 CUX1 Homo sapiens
HD-CUT Homeo domain factors
MA0754.3 MA0754 3 CUX1 Homo sapiens
HD-CUT Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0169.1

ChIP-seq Centrality
-log(P-value): 2847.12

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0169.1

ChIP-seq Centrality
-log(P-value): 2629.47

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: