Detailed information of matrix profile MA0798.3

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Profile summary
Name: RFX3
Matrix ID: MA0798.3
Class: Fork head/winged helix factors
Family: RFX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: NCAP-SELEX
Validation: 20378718
Uniprot ID: P48380  
Source: 30250250
Comment:

Sequence logo

Frequency matrix

         
A [ 57 6 0 257 820 2 0 2249 8 261 506 188 2249 2249 1 222 ]
C [ 1429 0 6 264 20 1859 2111 3 5 1 14 2249 0 2 2249 774 ]
G [ 583 2249 3 2 1429 15 1 3 6 1987 1743 21 180 6 0 1174 ]
T [ 180 0 2249 1992 106 389 137 7 2249 0 2 102 6 0 3 80 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0798.1 MA0798 1 RFX3 Homo sapiens
RFX-related factors Fork head/winged helix factors
MA0798.2 MA0798 2 RFX3 Homo sapiens
RFX-related factors Fork head/winged helix factors
MA0798.3 MA0798 3 RFX3 Homo sapiens
RFX-related factors Fork head/winged helix factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0791.1

ChIP-seq Centrality
-log(P-value): 2285.97

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0791.1

ChIP-seq Centrality
-log(P-value): 2337.99

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: