Detailed information of matrix profile MA0819.2

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Profile summary
Name: CLOCK
Matrix ID: MA0819.2
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: CAP-SELEX
Validation: 24591654
Uniprot ID: O15516  
Source: 30250250
Comment:

Sequence logo

Frequency matrix

         
A [ 944 52 2009 0 302 0 0 89 895 1106 ]
C [ 913 2009 6 2009 4 52 0 383 1287 1351 ]
G [ 1065 1 87 11 2009 3 2009 584 587 1278 ]
T [ 129 5 7 244 0 2009 146 2009 2009 2009 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0819.1 MA0819 1 CLOCK Homo sapiens
PAS domain factors Basic helix-loop-helix factors (bHLH)
MA0819.2 MA0819 2 CLOCK Homo sapiens
PAS domain factors Basic helix-loop-helix factors (bHLH)
MA0819.3 MA0819 3 CLOCK Homo sapiens
PAS domain factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0795.1

ChIP-seq Centrality
-log(P-value): 833.503

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0795.1

ChIP-seq Centrality
-log(P-value): 551.18

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: