Detailed information of matrix profile MA0859.1

  1. Home
  2. Matrix > MA0859.1

Profile summary
Name: Rarg
Matrix ID: MA0859.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P18911  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 5566 1 105 9774 2628 3 0 353 257 0 79 10030 1826 0 5 1309 ]
C [ 2470 82 67 51 9298 13267 394 618 114 15 38 64 11969 12765 3074 11289 ]
G [ 4836 4 11730 40 2 1 4 13 49 2 12653 35 3 0 147 1655 ]
T [ 11044 9147 0 6 0 1 9211 8864 9169 8844 3 20 0 3 7220 12548 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0859.1 MA0859 1 Rarg Mus musculus
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA0859.2 MA0859 2 Rarg Mus musculus
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: