Detailed information of matrix profile MA0878.2

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Profile summary
Name: CDX1
Matrix ID: MA0878.2
Class: Homeo domain factors
Family: HOX
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: P47902  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 3829 3371 0 0 0 18998 0 0 5655 3 4498 ]
C [ 2693 1687 19 0 10 0 0 28 1 18998 8784 ]
G [ 10693 7224 0 0 0 0 0 11785 13342 0 2471 ]
T [ 1782 18998 18998 18998 18998 0 18998 7213 0 1842 3246 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0878.1 MA0878 1 CDX1 Homo sapiens
HOX Homeo domain factors
MA0878.2 MA0878 2 CDX1 Homo sapiens
HOX Homeo domain factors
MA0878.3 MA0878 3 CDX1 Homo sapiens
HOX Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: