Detailed information of matrix profile MA0895.1

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Profile summary
Name: HMBOX1
Matrix ID: MA0895.1
Class: Homeo domain factors
Family: POU domain factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: Q6NT76  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 487 122 75 1231 2 26 237 1231 753 202 ]
C [ 449 683 25 0 51 1 50 4 478 542 ]
G [ 194 186 63 367 1231 5 8 17 130 370 ]
T [ 101 547 1231 44 5 1231 1231 102 140 117 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0895.1 MA0895 1 HMBOX1 Homo sapiens
POU domain factors Homeo domain factors
MA0895.2 MA0895 2 HMBOX1 Homo sapiens
POU domain factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0177.1

ChIP-seq Centrality
-log(P-value): 3462.12

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0177.1

ChIP-seq Centrality
-log(P-value): 3125.83

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: