Detailed information of matrix profile MA1120.1

  1. Home
  2. Matrix > MA1120.1

Profile summary
Name: SOX13
Matrix ID: MA1120.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 27521520
Uniprot ID: Q9UN79  
Source: 29126285
Comment:

Sequence logo

Frequency matrix

         
A [ 1152 993 461 73 4291 51 118 161 39 750 955 ]
C [ 1046 1074 2666 3837 28 63 50 60 40 1049 1395 ]
G [ 1126 1257 647 57 77 48 55 4276 22 958 663 ]
T [ 1228 1228 778 585 156 4390 4329 55 4451 1795 1539 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1120.1 MA1120 1 SOX13 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
MA1120.2 MA1120 2 SOX13 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
     

-log(P-value) = 81.5785

TFFM details

TFFM ID: TFFM0586.1

ChIP-seq Centrality
-log(P-value): 27.038

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0586.1

ChIP-seq Centrality
-log(P-value): 340.13

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: