Detailed information of matrix profile MA1148.1

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Profile summary
Name: PPARA::RXRA
Matrix ID: MA1148.1
Class: Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SMiLE-seq
Validation: 8386511
Uniprot ID: P19793   Q07869  
Source: 28092692
Comment:

Sequence logo

Frequency matrix

         
A [ 548 431 247 61 492 68 80 42 131 887 669 807 111 18 17 90 689 222 ]
C [ 140 73 211 94 95 19 15 157 445 16 24 25 16 14 49 598 37 237 ]
G [ 108 60 332 238 370 843 856 245 201 67 208 143 862 784 115 146 230 243 ]
T [ 204 437 210 608 42 71 49 556 223 30 99 25 11 184 818 166 43 298 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1148.1 MA1148 1 PPARA::RXRA Homo sapiens
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
MA1148.2 MA1148 2 PPARA::RXRA Homo sapiens
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: