Detailed information of matrix profile MA1151.1

  1. Home
  2. Matrix > MA1151.1

Profile summary
Name: RORC
Matrix ID: MA1151.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SMiLE-seq
Validation: 25500868
Uniprot ID: P51449  
Source: 28092692
Comment:

Sequence logo

Frequency matrix

         
A [ 42 153 661 8 74 11 753 249 431 120 416 255 ]
C [ 161 19 168 952 919 343 116 277 32 11 141 260 ]
G [ 12 822 112 3 2 24 87 249 10 14 114 179 ]
T [ 785 6 59 36 5 623 43 225 527 855 329 306 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1151.1 MA1151 1 RORC Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA1151.2 MA1151 2 RORC Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0578.1

ChIP-seq Centrality
-log(P-value): 2129.68

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0578.1

ChIP-seq Centrality
-log(P-value): 1944.35

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: