| Name: | SoxC |
| Matrix ID: | MA1917.1 |
| Class: | High-mobility group (HMG) domain factors |
| Family: | SOX-related factors |
| Collection: | CORE |
| Taxon: | Urochordates |
| Species: | Ciona intestinalis |
| Data Type: | SELEX |
| Validation: | 24680932 |
| Uniprot ID: | Q4H2S1 |
| Source: | 31267468 |
| Comment: |
| A [ | 305 | 364 | 316 | 257 | 268 | 240 | 256 | 805 | 51 | 33 | 60 | 51 | 66 | 246 | 241 | 244 | 243 | 255 | 256 | 257 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 250 | 175 | 184 | 189 | 196 | 240 | 276 | 35 | 34 | 24 | 42 | 34 | 59 | 215 | 208 | 209 | 220 | 215 | 216 | 219 | ] |
| G [ | 203 | 207 | 220 | 229 | 247 | 231 | 170 | 63 | 42 | 34 | 849 | 38 | 72 | 234 | 229 | 236 | 238 | 235 | 232 | 232 | ] |
| T [ | 242 | 254 | 279 | 326 | 289 | 289 | 298 | 97 | 873 | 909 | 48 | 878 | 804 | 304 | 321 | 312 | 300 | 296 | 296 | 292 | ] |
Binding sites information
No Binding sites available for this model.
External links
| Matrix ID | Base ID | Version | Name | Species | Family | Class | Sequence logo |
|---|---|---|---|---|---|---|---|
| MA1917.1 | MA1917 | 1 | SoxC |
Ciona intestinalis
|
SOX-related factors | High-mobility group (HMG) domain factors |  |
| MA1917.2 | MA1917 | 2 | SoxC |
Ciona intestinalis
|
SOX-related factors | High-mobility group (HMG) domain factors |  |
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.
Description:
Alias:
Symbol:
Consensus:
Included Models:
GC Content: