Detailed information of matrix profile MA1930.1

Profile summary

Name: CTCF
Matrix ID: MA1930.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 34326481
Uniprot ID: P49711  
Source: ReMap
Comment: TF has several motif variants. Extended motif with zinc finger 8 (6bp)

Sequence logo

Frequency matrix

A [ 293 242 41 86 1986 445 158 346 453 497 714 536 467 664 563 593 452 560 604 178 38 1906 127 348 2179 32 1140 169 62 119 335 1021 279 314 787 ]
C [ 1497 107 35 2129 127 366 278 324 1333 1129 794 855 1138 604 730 902 781 458 300 2074 2515 97 1409 1016 54 9 14 71 14 138 1833 164 1307 892 591 ]
G [ 400 144 2476 25 155 1456 179 892 328 419 623 770 561 376 541 494 393 1041 1242 155 9 275 961 175 212 2527 1399 1208 2472 2117 86 1161 740 265 659 ]
T [ 386 2083 24 336 308 309 1961 1014 462 531 445 415 410 932 742 587 950 517 430 169 14 298 79 1037 131 8 23 1128 28 202 322 230 250 1105 539 ]

Binding sites information

External links