Detailed information of matrix profile UN0454.1

  1. Home
  2. Matrix > UN0454.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: Mef2
Matrix ID: UN0454.1
Class: MADS box factors
Family: Regulators of differentiation
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID: Q4H375  
Source: 31267468
Comment:

Sequence logo

Frequency matrix

         
A [ 276 273 198 265 106 184 325 841 101 84 59 55 20 353 398 291 262 288 268 261 ]
C [ 185 147 110 405 655 430 221 23 8 23 72 36 18 165 199 276 278 222 236 242 ]
G [ 266 255 263 119 62 240 261 25 9 27 106 855 922 255 153 161 200 238 240 226 ]
T [ 272 325 429 211 178 146 193 112 882 866 763 54 40 227 250 272 260 253 256 271 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0454.1 UN0454 1 Mef2 Ciona intestinalis
Regulators of differentiation MADS box factors
UN0454.2 UN0454 2 Mef2 Ciona intestinalis
Regulators of differentiation MADS box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: