Detailed information of matrix profile MA0550.3

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Profile summary
Name: BZR1
Matrix ID: MA0550.3
Class: Basic helix-loop-helix factors (bHLH)
Family: BES/BZR
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 15681342
Uniprot ID: Q8S307  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 48 261 0 583 0 0 10 13 0 61 ]
C [ 280 39 588 0 588 0 4 0 203 4 ]
G [ 47 277 0 0 0 588 1 575 34 519 ]
T [ 213 11 0 5 0 0 573 0 351 4 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0550.1 MA0550 1 BZR1 Arabidopsis thaliana
BES/BZR Basic helix-loop-helix factors (bHLH)
MA0550.2 MA0550 2 BZR1 Arabidopsis thaliana
BES/BZR Basic helix-loop-helix factors (bHLH)
MA0550.3 MA0550 3 BZR1 Arabidopsis thaliana
BES/BZR Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: