Detailed information of matrix profile MA0570.2

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Profile summary
Name: ABF1
Matrix ID: MA0570.2
Class: Basic leucine zipper factors (bZIP)
Family: Group A
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 10636868
Uniprot ID: Q9M7Q5  
Source: 30445619
Comment:

Sequence logo

Frequency matrix

         
A [ 345 364 79 33 384 6 1128 9 17 3 141 204 ]
C [ 225 234 117 28 707 1123 1 1107 15 11 124 60 ]
G [ 213 195 36 999 11 3 8 9 1099 4 793 284 ]
T [ 358 348 909 81 39 9 4 16 10 1123 83 593 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0570.1 MA0570 1 ABF1 Arabidopsis thaliana
Group A Basic leucine zipper factors (bZIP)
MA0570.2 MA0570 2 ABF1 Arabidopsis thaliana
Group A Basic leucine zipper factors (bZIP)
MA0570.3 MA0570 3 ABF1 Arabidopsis thaliana
Group A Basic leucine zipper factors (bZIP)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0435.1

ChIP-seq Centrality
-log(P-value): 2527.29

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0435.1

ChIP-seq Centrality
-log(P-value): 2596.76

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: