Detailed information of matrix profile MA0650.2

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Profile summary
Name: HOXA13
Matrix ID: MA0650.2
Class: Homeo domain factors
Family: HOX
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 17200107
Uniprot ID: P31271  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 194 82 0 0 0 954 0 0 54 0 18 ]
C [ 102 36 0 1 17 0 0 0 0 254 290 ]
G [ 758 245 0 0 0 0 0 394 954 954 351 ]
T [ 196 954 954 954 954 0 954 954 0 63 294 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0650.1 MA0650 1 HOXA13 Homo sapiens
HOX Homeo domain factors
MA0650.2 MA0650 2 HOXA13 Homo sapiens
HOX Homeo domain factors
MA0650.3 MA0650 3 Hoxa13 Mus musculus
HOX Homeo domain factors
MA0650.4 MA0650 4 Hoxa13 Mus musculus
HOX Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0504.1

ChIP-seq Centrality
-log(P-value): 5749.51

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0504.1

ChIP-seq Centrality
-log(P-value): 5611.71

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: