Detailed information of matrix profile MA0743.1

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Profile summary
Name: SCRT1
Matrix ID: MA0743.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 11274425
Uniprot ID: Q9BWW7  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 524 467 502 255 1136 2 5 0 0 0 24 20 519 410 111 ]
C [ 118 298 1034 1302 2 1629 1461 0 0 0 0 3 1400 89 574 ]
G [ 317 302 217 42 3 0 3 0 1501 0 35 1447 40 203 167 ]
T [ 269 187 139 154 0 0 190 1075 1 1071 1046 7 30 452 472 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0743.1 MA0743 1 SCRT1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0743.2 MA0743 2 SCRT1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0743.3 MA0743 3 SCRT1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0580.1

ChIP-seq Centrality
-log(P-value): 88772.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0580.1

ChIP-seq Centrality
-log(P-value): 88787.6

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: