Detailed information of matrix profile MA1370.2

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Profile summary
Name: IDD5
Matrix ID: MA1370.2
Class: C2H2 zinc finger factors
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q9ZUL3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 107 15 101 131 122 146 32 0 159 1 157 151 148 119 ]
C [ 3 75 0 8 10 8 111 0 0 159 0 7 4 8 ]
G [ 44 57 6 4 25 5 14 160 1 0 3 2 7 4 ]
T [ 6 13 53 17 3 1 3 0 0 0 0 0 1 29 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1370.1 MA1370 1 IDD5 Arabidopsis thaliana
C2H2 zinc finger factors
MA1370.2 MA1370 2 IDD5 Arabidopsis thaliana
IDD C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: