Detailed information of matrix profile MA1441.1

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Profile summary
Name: lim-7
Matrix ID: MA1441.1
Class: Homeo domain factors
Family:
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis briggsae
Data Type: PBM
Validation: 18585359
Uniprot ID: A8WVZ2  
Source: 31133749
Comment: like ISL2, lim-7 has V,Q, C at positions 47, 50, 54. Hence, it binds to CAA/CTTA.

Sequence logo

Frequency matrix

         
A [ 368 124 266 486 903 189 90 999 602 126 399 ]
C [ 147 124 439 314 0 0 0 0 192 126 200 ]
G [ 241 411 49 0 0 0 0 0 102 512 200 ]
T [ 241 340 244 199 95 809 908 0 102 234 200 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1441.1 MA1441 1 lim-7 Caenorhabditis briggsae
Homeo domain factors
MA1441.2 MA1441 2 lim-7 Caenorhabditis briggsae
HD-LIM Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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